APBI 398: Research Methods in Applied Biology

This course is intended to provide students with in-depth research experience, and with the support and skills that will allow them to succeed in research. The course is intended for students who wish to acquire more familiarity with research, and will prepare students for more independent research offerings such as directed studies courses, and the undergraduate essay and thesis courses (APBI 498 & 499). Specifically, this course provides students hands-on experience with a specific research project in the form of an internship in a laboratory of their choosing, combined with a supportive classroom setting in which they receive peer feedback and learn more general research skills.

Time and place

The class meets on Mondays, 14:00-17:00 in Neville Scarfe (SCRF) room 205. We will be conducting the class at UBC, on the traditional, ancestral, and unceded territory of the xwməθkwəy̓əm (Musqueam) people.

Learning objectives

The course is based on experiential learning. You will work together with a researcher throughout the semester to gain exposure to research techniques and ideas, and to develop a passion for your research area.

You will show your general understanding of the main research questions and approaches through a “news feature” style presentation, designed to be accessible to a general audience. This presentation will allow you to develop skills in scientific journalism and will expose other students in the class to your research area.

You will demonstrate understanding of your research area by completing a “scientific conference” style abstract and a poster presentation. The abstract and presentation will be based on your work with your mentor and will describe your research objectives, methodology, (predicted) results and conclusions. The presentation and abstract will allow you to develop scholarly presentation skills.

You will show your grasp of your research area, your ability to develop novel scientific ideas, and your ability to summarize research papers by writing a 2-page novel research proposal. This proposal will be on a research topic of your choice that ideally builds on your experience with your mentor.

Learning activities

The course requires that students find a mentor who allows the student to work in their research group for a minimum of 20 h. Classes involve exercises and discussions, reflecting upon the mentorship experience, learning research skills (including public speaking and scientific writing), and interacting with peers (including giving and receiving peer feedback). A high level of attendance and participation is crucial for success. Little material is presented in lecture format; factual recall of lecture material is not one of the objectives of the course.

Instructors

Daniel Weary (he, him, his), Room 189 MacMillan, danweary@mail.ubc.ca

Nina von Keyserlingk (she, her, hers), Room 181 MacMillan, nina@mail.ubc.ca

Joey Krahn (he, him, his), Room 180F MacMillan, joey.krahn@ubc.ca

Evaluation

Evaluation emphasizes independent research and effective communication, as evidenced by an oral presentation, a research proposal, and a scientific poster presentation describing their research to the class. There will be no examination.

First oral presentation: 5%

Self-reflection on video: 2%

Midway self-reflection on participation: 2.5%

Research proposal outline: 7.5%

Research proposal draft: 15%

Research proposal final: 20%

Conference abstract: 8%

Poster (and poster presentation): 20%

Class participation: 10%

Participation with mentor: 10%

Total: 100*

*Participation in external seminars: up to 2% bonus

Learning materials

Readings and materials will be posted on Canvas.

Plagiarism

This course involves a lot of writing. Before taking the course, make sure you are very clear on what is considered plagiarism at UBC. Everything should be written “from scratch” in your own words. If you want to include text from any source – a paper, the internet, or another student – the material should appear in quotation marks and the source should be clearly acknowledged. Sometimes plagiarism happens accidentally, for example if someone copies material into their rough notes and then uses the notes in their own writing. To help avoid such problems we request that students use Turnitin for their final paper, and include your Turnitin number on the title page.

University Policies

UBC provides resources to support student learning and to maintain healthy lifestyles but recognizes that sometimes crises arise and so there are additional resources to access including those for survivors of sexual violence. UBC values respect for the person and ideas of all members of the academic community. Harassment and discrimination are not tolerated nor is suppression of academic freedom. UBC provides appropriate accommodation for students with disabilities and for religious observances. UBC values academic honesty and students are expected to acknowledge the ideas generated by others and to uphold the highest academic standards in all of their actions. Details of the policies and how to access support are available on the UBC Senate website.

Course structure and schedule

Class	Date	Agenda
1	Sept 12	Introduction Mentor presentations
2	Sept 19	Intro to lay presentations Due: Mentor contracts
3	Sept 26	Lay presentations (videotaped) with feedback Literature review workshop Due: Student-mentor goals and expectations form
4	Oct 3	Lay presentations (videotaped) with feedback Research proposal workshop I Due: Self-reflection on lay presentation video for those who presented on Sept 26
	Oct 10	Thanksgiving (no class) Due: Self-reflection on lay presentation video for those who presented on Oct 3
5	Oct 17	Lay presentations (videotaped) with feedback Research proposal workshop II
6	Oct 24	Lay presentations (videotaped) with feedback Abstract workshop part I Due: Research proposal outline Due: Self-evaluation on participation Due: Self-reflection on lay presentation video for those who presented on Oct 17
7	Oct 31	Lay presentations (videotaped) with feedback Abstract workshop part II Due: Midway reflection on progress with mentor Due: Abstracts for peer-review Due: Self-reflection on lay presentation video for those who presented on Oct 24
8	Nov 7	Lay presentations (videotaped) with feedback Poster workshop I Due: Abstracts Due: Self-reflection on lay presentation video for those who presented on Oct 31
9	Nov 14	Lay presentations (videotaped) with feedback Poster workshop II Due: Draft poster for peer review Due: Draft research proposal peer reviews Due: Self-reflection on lay presentation video for those who presented on Nov 7
10	Nov 21	Poster session I Due: Final posters Due: Draft research proposal Due: Self-reflection on lay presentation video for those who presented on Nov 14
11	Nov 28	Poster session II
12	Dec 5	Final proposal feedback and course wrap-up Due: Mentor evaluations; final proposals due Dec 6

Covid-19 Safety

This course will follow the UBC policies regarding the response to COVID-19. You can access updated information on COVID-19 the UBC's response here: https://covid19.ubc.ca

Some UBC guidelines to follow during in-person classes are:

Know the symptoms of COVID-19 and complete a daily health assessment. If you are sick, stay at home. Learn about the self-assessment tool at https://thrive.health.
Wash your hands regularly.
We strongly recommend that all UBC community members get vaccinated and if eligible, receive their booster dose. You can learn more at https://immunizebc.ca.
As a reminder, in BC, free vaccines are available to students arriving from international destinations and other provinces

Personal Health

If you are sick, it is important that you stay home – no matter what you think you may be sick with (e.g., cold, flu, other).

Make a connection early in the term to another student or a group of students in the

class to share notes in the event that one of you needs to miss class.

If you do miss class because of illness:

Consult the class resources on Canvas.
Exchange lecture notes with your fellow classmates.
Come to virtual office hours.
If you will need to miss a particular activity due to illness, please contact the teaching team to discuss. We will do our best to accommodate and consider these absences in the calculation of participation grades.

Instructor Health

If we (the instructors) are sick: We will do our best to stay well, but if one of us becomes ill, develop Covid symptoms, or test positive for Covid, then we will not come to class. If that happens, one of the other instructors will fill in, or we may have a synchronous online session or two. If this happens, you will receive an email telling you how to join the class on Zoom. Our classroom will still be available for you to sit and attend an online session, in this (hopefully rare) instance.